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SRX17707771: GSM6600882: Root midsection, P sufficient, rep 3 [PSM3]; Solanum pennellii; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2000) run: 14.6M spots, 640.7M bases, 300.4Mb downloads

External Id: GSM6600882_r1
Submitted by: Plant Biology and Genome Center, UC Davis
Study: 35S:TRAP of S. lycopersicum and S. pennellii roots under phosphate-deprivation
show Abstracthide Abstract
Phosphate is a necessary macronutrient for basic biological processes, plant growth, and agriculture. Plants modulate their root system architecture and cellular processes to adapt to phosphate deprivation albeit with a growth penalty. Excess application of phosphate in the form of fertilizer can lead to eutrophication and has negative environmental impact. Moreover, phosphate mined from rock reserves is a finite and non-recyclable resource and its levels are nearing complete depletion. Here, we show that Solanum pennellii, a wild relative of tomato, is partially insensitive to phosphate deprivation. Furthermore, it mounts a constitutive response under phosphate sufficiency. We demonstrate that activated brassinosteroid signaling through a tomato BZR1 ortholog gives rise to the same constitutive phosphate deficiency response which is dependent on over-accumulation of zinc. Collectively, these results reveal an additional strategy by which plants can adapt to phosphate starvation. Overall design: 35S:TRAP construct-containing tomato seedlings were harvested between eight and ten days after germination. Two tissues were extracted for analysis, the root tip and the root midsection. A total of 4 biological replicates for each genotype and treatment were used with between 30 and 40 plants in each biological replicate.
Sample: Root midsection, P sufficient, rep 3 [PSM3]
SAMN31019360 • SRS15238291 • All experiments • All runs
Library:
Name: GSM6600882
Instrument: Illumina HiSeq 2000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: Total RNA was extracted using the Direct-zol RNA Miniprep kit (ZYMO). RNA libraries were prepared using Breath Adapter Directional sequencing (BrAD-seq) a strand-specific 3-prime RNA-seq library prep protocol Libraries were pooled, barcoded, and submitted to the UC Davis DNA Technologies Core and were sequenced on Illumina HiSeq2000 SR50
Runs: 1 run, 14.6M spots, 640.7M bases, 300.4Mb
Run# of Spots# of BasesSizePublished
SRR2171036614,562,180640.7M300.4Mb2023-10-10

ID:
24610182

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